Yukawa-Field Approximation of Electrostatic Free Energy and Dielectric Boundary Force.
نویسندگان
چکیده
A Yukawa-field approximation of the electrostatic free energy of a molecular solvation system with an implicit or continuum solvent is constructed. It is argued through the analysis of model molecular systems with spherically symmetric geometries that such an approximation is rational. The construction extends non-trivially that of the Coulomb-field approximation which serves as a basis of the widely used generalized Born model of molecular electrostatics. The electrostatic free energy determines the dielectric boundary force that in turn influences crucially the molecular conformation, stability, and dynamics. An explicit formula of such forces with the Yukawa-field approximation is obtained using local coordinates and shape differentiation.
منابع مشابه
Dielectric Boundary Force in Molecular Solvation with the Poisson-Boltzmann Free Energy: A Shape Derivative Approach
In an implicit-solvent description of molecular solvation, the electrostatic free energy is given through the electrostatic potential. This potential solves a boundary-value problem of the Poisson-Boltzmann equation in which the dielectric coefficient changes across the solute-solvent interface-the dielectric boundary. The dielectric boundary force acting on such a boundary is the negative firs...
متن کاملLevel-Set Variational Implicit-Solvent Modeling of Biomolecules with the Coulomb-Field Approximation
Central in the variational implicit-solvent model (VISM) [Dzubiella, Swanson, and McCammon Phys. Rev. Lett.2006, 96, 087802 and J. Chem. Phys.2006, 124, 084905] of molecular solvation is a mean-field free-energy functional of all possible solute-solvent interfaces or dielectric boundaries. Such a functional can be minimized numerically by a level-set method to determine stable equilibrium confo...
متن کاملMotion of a Cylindrical Dielectric Boundary
The interplay between geometry and electrostatics contributes significantly to hydrophobic interactions of biomolecules in an aqueous solution. With an implicit solvent, such a system can be described macroscopically by the dielectric boundary that separates the high-dielectric solvent from low-dielectric solutes. This work concerns the motion of a model cylindrical dielectric boundary as the s...
متن کاملSolubility Modelling in Condensed Matter Dielectric Continuum Theory and Nonlinear Response
iii Abstract Solubility Modelling in Condensed Matter. Dielectric Continuum Theory and Nonlinear Response. Lars Sandberg, Theoretical Biophysics Group, Department of Physics, Royal Institute of Technology, SE-106 91 Stockholm, SWEDEN.Solubility Modelling in Condensed Matter. Dielectric Continuum Theory and Nonlinear Response. Lars Sandberg, Theoretical Biophysics Group, Department of Physics, R...
متن کاملDynamic Pull-in Instability of Nano-Actuators in the Presence of a Dielectric Layer
The natural frequency and pull-in instability of clamped-clamped nano-actuators in the presence of a dielectric layer are analyzed. The influence of the presence of Casimir force, electrostatic force, fringing field effect, axial force, stretching effects and the size effect are taken into account. The governing equation of the dynamic response of the actuator is transformed in a non-dimensiona...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید
ثبت ناماگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید
ورودعنوان ژورنال:
- Nonlinearity
دوره 24 11 شماره
صفحات -
تاریخ انتشار 2011